Publications
Please cite these papers when you publish results created on the ClusPro server.
Kozakov, D., Hall, D. R., Beglov, D., Brenke, R., Comeau, S. R., Shen, Y., Li, K., Zheng, J., Vakili, P., Paschalidis, I. C. and Vajda, S. (2010), Achieving reliability and high accuracy in automated protein docking: Cluspro, PIPER, SDU, and stability analysis in CAPRI rounds 13–19. Proteins: Structure, Function, and Bioinformatics, 78: 3124–3130; pdf
Kozakov D, Brenke R, Comeau SR, Vajda S. PIPER: An FFT-based protein docking program with pairwise potentials. Proteins. 2006 Aug 24; pdf
Comeau SR, Gatchell DW, Vajda S, Camacho CJ. ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics. 2004 Jan 1; pdf
Comeau SR, Gatchell DW, Vajda S, Camacho CJ. ClusPro: a fully automated algorithm for protein-protein docking Nucleic Acids Research. 2004 Jul 1; pdf
Kozakov D, Brenke R, Comeau SR, Vajda S. PIPER: An FFT-based protein docking program with pairwise potentials. Proteins. 2006 Aug 24; pdf
Comeau SR, Gatchell DW, Vajda S, Camacho CJ. ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics. 2004 Jan 1; pdf
Comeau SR, Gatchell DW, Vajda S, Camacho CJ. ClusPro: a fully automated algorithm for protein-protein docking Nucleic Acids Research. 2004 Jul 1; pdf
And this paper, if Antibody mode is used to create the results.
Brenke R, Hall DR, Chuang G-Y, Comeau SR, Bohnuud T, Beglov D, Schueler-Furman O, Vajda S, Kozakov D. 2012. Application of asymmetric statistical potentials to antibody-protein docking.
Bioinformatics. 28(20):2608-2614; pdf
ClusPro should only be used for noncommercial purposes.
Structural Bioinformatics Lab
Boston University
Structural Bioinformatics Lab
Boston University